STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO7LIM domain only protein 7-like. (1344 aa)    
Predicted Functional Partners:
commd6
COMM domain-containing protein 6-like.
     
 0.786
Z043_101706
NEDD8-activating enzyme E1 regulatory subunit-like.
   
 
  0.604
commd8
COMM domain-containing protein.
    
  0.603
commd5
COMM domain-containing protein.
   
 
  0.601
LOC108937896
NEDD8.
   
 0.548
NEDD8
Uncharacterized protein.
   
 0.548
afdn
Afadin-like.
    
 
 0.543
LOC108929701
S-phase kinase-associated protein 1-like; Belongs to the SKP1 family.
     
 0.535
SKP1
S-phase kinase-associated protein 1.
     
 0.535
UBA3
NEDD8-activating enzyme E1 catalytic subunit-like.
   
 
  0.506
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.