STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyw3tRNA-yW synthesizing protein 3 homolog. (281 aa)    
Predicted Functional Partners:
LOC108922478
Flavodoxin-like domain-containing protein.
  
  
 0.778
trmt5
SAM_MT_TRM5_TYW2 domain-containing protein.
  
 
 0.766
trmt12
tRNA wybutosine-synthesizing protein 2-like.
  
 
 0.758
lcmt2
tRNA wybutosine-synthesizing protein 4-like.
   
  
 0.693
ftsj1
Mononegavirus-type SAM-dependent 2'-O-MTase domain-containing protein.
   
  
 0.601
tyw5
tRNA wybutosine-synthesizing protein 5-like.
      
 0.600
MRPL49
39S ribosomal protein L49, mitochondrial.
      
 0.578
pus10
Putative tRNA pseudouridine synthase Pus10.
      
 0.565
Lgsn
Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.
      
 0.558
pus7
Pseudouridylate synthase 7-like.
   
  
 0.540
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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