STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atg2aATG_C domain-containing protein. (1995 aa)    
Predicted Functional Partners:
ulk1
Serine/threonine-protein kinase ULK1-like.
   
 0.984
ulk2
Serine/threonine-protein kinase ULK2-like.
   
 0.984
WIPI2
WD repeat domain phosphoinositide-interacting protein 2-like.
    
 0.973
wipi1
WD repeat domain phosphoinositide-interacting protein 1-like.
    
 0.973
ATG2B
Autophagy-related protein 2B-like.
  
  
0.910
Z043_125785
WD repeat domain phosphoinositide-interacting protein 2-like.
    
 
 0.744
LOC108924053
Serine/threonine-protein kinase PDIK1L-like; Belongs to the protein kinase superfamily.
   
 
 0.697
Ulk3
Serine/threonine-protein kinase ULK3-like.
   
 
 0.697
pdik1l
Serine/threonine-protein kinase pdik1l-like; Belongs to the protein kinase superfamily.
   
 
 0.697
LOC108932499
Serine/threonine-protein kinase 35-like; Belongs to the protein kinase superfamily.
   
 
 0.697
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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