STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sptlc1Serine palmitoyltransferase 1-like. (482 aa)    
Predicted Functional Partners:
kdsr
3-ketodihydrosphingosine reductase-like.
     
 0.994
sptssa
Serine palmitoyltransferase small subunit A-like.
    
 0.955
SPTLC2
Aminotran_1_2 domain-containing protein.
  
0.908
LOC108922330
Serine palmitoyltransferase 2-like.
  
0.907
sptlc3
Serine palmitoyltransferase 3-like.
  
0.906
ism1
AMOP domain-containing protein.
 
 
 0.890
Z043_103098
Serine palmitoyltransferase small subunit B-like.
    
 0.884
Z043_113921
AMOP domain-containing protein.
 
 
 0.862
ENSSFOP00015015560
annotation not available
 
 
 0.862
LOC108922263
Isthmin-2-like.
   
 0.862
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.