STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108934094Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
Z043_104959
Cyclin-G-associated kinase-like.
    
 
 0.674
rabggta
RabGGT_insert domain-containing protein.
    
 0.656
LOC108934451
Uncharacterized protein.
    
 0.617
Hps1
Hermansky-Pudlak syndrome 1 protein-like.
     
 0.566
Z043_107906
Ankyrin repeat domain-containing protein 27-like.
    
 
 0.559
LOC108941155
Ankyrin repeat domain-containing protein 27-like.
    
 
 0.559
ptar1
Uncharacterized protein.
    
 0.531
hps4
Hermansky-Pudlak syndrome 4 protein isoform X1.
     
 0.529
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.468
gdi2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.467
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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