STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssna1Sjoegren syndrome nuclear autoantigen 1-like. (117 aa)    
Predicted Functional Partners:
psmc5
26S protease regulatory subunit 8-like; Belongs to the AAA ATPase family.
   
 
 0.565
nup43
Nucleoporin Nup43-like.
      
 0.548
haus1
HAUS augmin-like complex subunit 1-like.
     
 0.525
haus7
HAUS augmin-like complex subunit 7-like.
     
 0.503
Lrguk
Leucine-rich repeat and guanylate kinase domain-containing protein-like.
      
 0.459
Psmd10
26S proteasome non-ATPase regulatory subunit 10-like.
     
 0.449
Abcf3
ATP-binding cassette sub-family F member 3-like.
      
 0.441
rbm42
RNA-binding protein 42-like.
   
 
  0.437
cntln
Uncharacterized protein.
      
 0.432
TPPP
Tubulin polymerization-promoting protein-like.
      
 0.424
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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