Z043_112634 protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Z043_112634

T-box transcription factor TBX19-like. (424 aa)

Predicted Functional Partners:

LOC108920583

0.575

Z043_122860

0.533

foxh1

0.532

SNAI2

0.528

EOMES

0.496

Z043_114188

0.475

LOC108942490

0.472

tbr1

0.472

Z043_121825

0.443

Z043_103121

0.441

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EOMES	SNAI2	ENSSFOP00015035375	ENSSFOP00015028084	Eomesodermin-like.	Zinc finger protein SNAI2-like.	0.487
EOMES	Z043_112634	ENSSFOP00015035375	ENSSFOP00015071185	Eomesodermin-like.	T-box transcription factor TBX19-like.	0.496
EOMES	Z043_122860	ENSSFOP00015035375	ENSSFOP00015057437	Eomesodermin-like.	POU domain protein.	0.407
EOMES	foxh1	ENSSFOP00015035375	ENSSFOP00015015966	Eomesodermin-like.	Forkhead box protein H1-like.	0.530
LOC108920583	Z043_112634	ENSSFOP00015029736	ENSSFOP00015071185	Homeobox protein notochord-like.	T-box transcription factor TBX19-like.	0.575
LOC108920583	Z043_121825	ENSSFOP00015029736	ENSSFOP00015004435	Homeobox protein notochord-like.	T-box-containing protein TBX6L-like.	0.601
LOC108942490	SNAI2	ENSSFOP00015013224	ENSSFOP00015028084	Eomesodermin-like protein a-1-like.	Zinc finger protein SNAI2-like.	0.487
LOC108942490	Z043_112634	ENSSFOP00015013224	ENSSFOP00015071185	Eomesodermin-like protein a-1-like.	T-box transcription factor TBX19-like.	0.472
LOC108942490	Z043_122860	ENSSFOP00015013224	ENSSFOP00015057437	Eomesodermin-like protein a-1-like.	POU domain protein.	0.407
LOC108942490	foxh1	ENSSFOP00015013224	ENSSFOP00015015966	Eomesodermin-like protein a-1-like.	Forkhead box protein H1-like.	0.530
SNAI2	EOMES	ENSSFOP00015028084	ENSSFOP00015035375	Zinc finger protein SNAI2-like.	Eomesodermin-like.	0.487
SNAI2	LOC108942490	ENSSFOP00015028084	ENSSFOP00015013224	Zinc finger protein SNAI2-like.	Eomesodermin-like protein a-1-like.	0.487
SNAI2	Z043_112634	ENSSFOP00015028084	ENSSFOP00015071185	Zinc finger protein SNAI2-like.	T-box transcription factor TBX19-like.	0.528
SNAI2	tbr1	ENSSFOP00015028084	ENSSFOP00015035985	Zinc finger protein SNAI2-like.	T-box brain protein 1-like.	0.487
Z043_103121	Z043_112634	ENSSFOP00015034206	ENSSFOP00015071185	Uncharacterized protein.	T-box transcription factor TBX19-like.	0.441
Z043_112634	EOMES	ENSSFOP00015071185	ENSSFOP00015035375	T-box transcription factor TBX19-like.	Eomesodermin-like.	0.496
Z043_112634	LOC108920583	ENSSFOP00015071185	ENSSFOP00015029736	T-box transcription factor TBX19-like.	Homeobox protein notochord-like.	0.575
Z043_112634	LOC108942490	ENSSFOP00015071185	ENSSFOP00015013224	T-box transcription factor TBX19-like.	Eomesodermin-like protein a-1-like.	0.472
Z043_112634	SNAI2	ENSSFOP00015071185	ENSSFOP00015028084	T-box transcription factor TBX19-like.	Zinc finger protein SNAI2-like.	0.528
Z043_112634	Z043_103121	ENSSFOP00015071185	ENSSFOP00015034206	T-box transcription factor TBX19-like.	Uncharacterized protein.	0.441