STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS15978.1Serine phosphatase RsbU, regulator of sigma subunit. (443 aa)    
Predicted Functional Partners:
SDS15947.1
Methanogenic corrinoid protein MtbC1.
 
     0.930
SDT58432.1
PAS domain S-box-containing protein.
 
 
 0.897
SDT46754.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
 0.883
SDT72453.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.870
SDT72929.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
  0.869
SDT78222.1
GAF domain-containing protein.
 
 
 0.850
SDS57550.1
PAS domain S-box-containing protein.
 
0.826
SDT46905.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 
  0.814
SDT43866.1
Hpt domain-containing protein.
  
 
  0.787
SDT60287.1
PAS domain S-box-containing protein.
 
 
 0.770
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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