STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS51094.1NAD(P)H dehydrogenase (quinone). (278 aa)    
Predicted Functional Partners:
SDT78124.1
NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family.
    
 0.830
SDS93840.1
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.793
SDT55647.1
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.793
SDT59132.1
Diaminopimelate decarboxylase.
    
  0.793
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.793
SDS73812.1
Kef-type K+ transport system, membrane component KefB.
  
 
 0.743
SDT73303.1
Potassium/proton antiporter membrane subunit, CPA2 family.
  
 
 0.743
SDS88716.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
  
  0.729
SDS84310.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
  
 
  0.702
SDT42786.1
NAD(P)H dehydrogenase (quinone).
  
 
  0.702
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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