STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS69155.1Predicted arabinose efflux permease, MFS family. (410 aa)    
Predicted Functional Partners:
SDS69111.1
Helix-turn-helix domain-containing protein.
 
     0.841
SDT77214.1
Predicted arabinose efflux permease, MFS family; Manually curated.
  
     0.710
SDS69058.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.693
SDT51995.1
Predicted arabinose efflux permease, MFS family.
  
     0.667
SDT73218.1
Predicted arabinose efflux permease, MFS family.
  
     0.655
SDT72332.1
Predicted arabinose efflux permease, MFS family.
  
     0.627
SDT72699.1
Predicted arabinose efflux permease, MFS family.
  
     0.556
SDT72142.1
Predicted arabinose efflux permease, MFS family.
  
     0.549
SDS68975.1
Acetyltransferase (GNAT) family protein.
       0.498
SDS69030.1
Hypothetical protein.
       0.498
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.