STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS80474.1DNA-binding transcriptional regulator, GntR family. (246 aa)    
Predicted Functional Partners:
SDS80916.1
Hypothetical protein.
 
     0.816
SDS80843.1
5-dehydro-2-deoxygluconokinase.
 
  
  0.812
SDS80954.1
5-deoxyglucuronate isomerase.
 
     0.775
SDS80514.1
2-keto-myo-inositol dehydratase.
 
    0.773
SDS80990.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
   
 0.739
SDT68020.1
GntR family transcriptional regulator.
  
     0.724
SDT34417.1
5-deoxyglucuronate isomerase.
 
     0.713
SDS17876.1
Transcriptional regulator, GntR family.
  
     0.610
SDT77726.1
GntR family transcriptional regulator.
  
     0.599
SDS80580.1
Simple sugar transport system substrate-binding protein.
 
     0.553
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.