Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDT11595.1 | SDT11626.1 | SAMN04489716_2555 | SAMN04489716_2556 | UvrD-like helicase C-terminal domain-containing protein. | Helicase conserved C-terminal domain-containing protein. | 0.956 |
| SDT11595.1 | SDT11669.1 | SAMN04489716_2555 | SAMN04489716_2557 | UvrD-like helicase C-terminal domain-containing protein. | Hypothetical protein. | 0.964 |
| SDT11595.1 | SDT11706.1 | SAMN04489716_2555 | SAMN04489716_2558 | UvrD-like helicase C-terminal domain-containing protein. | Hypothetical protein. | 0.900 |
| SDT11595.1 | SDT11738.1 | SAMN04489716_2555 | SAMN04489716_2559 | UvrD-like helicase C-terminal domain-containing protein. | SNF2 family N-terminal domain-containing protein. | 0.964 |
| SDT11595.1 | SDT40395.1 | SAMN04489716_2555 | SAMN04489716_3641 | UvrD-like helicase C-terminal domain-containing protein. | ATP-dependent DNA helicase RecQ. | 0.745 |
| SDT11595.1 | SDT71646.1 | SAMN04489716_2555 | SAMN04489716_6218 | UvrD-like helicase C-terminal domain-containing protein. | ATP-dependent DNA helicase, RecQ-like. | 0.745 |
| SDT11595.1 | SDT76826.1 | SAMN04489716_2555 | SAMN04489716_7742 | UvrD-like helicase C-terminal domain-containing protein. | ATP-dependent DNA helicase, Rep family. | 0.745 |
| SDT11595.1 | recA | SAMN04489716_2555 | SAMN04489716_8161 | UvrD-like helicase C-terminal domain-containing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.910 |
| SDT11595.1 | topA | SAMN04489716_2555 | SAMN04489716_6408 | UvrD-like helicase C-terminal domain-containing protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.812 |
| SDT11595.1 | uvrB | SAMN04489716_2555 | SAMN04489716_4981 | UvrD-like helicase C-terminal domain-containing protein. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.878 |
| SDT11626.1 | SDT11595.1 | SAMN04489716_2556 | SAMN04489716_2555 | Helicase conserved C-terminal domain-containing protein. | UvrD-like helicase C-terminal domain-containing protein. | 0.956 |
| SDT11626.1 | SDT11669.1 | SAMN04489716_2556 | SAMN04489716_2557 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.956 |
| SDT11626.1 | SDT11706.1 | SAMN04489716_2556 | SAMN04489716_2558 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.902 |
| SDT11626.1 | SDT11738.1 | SAMN04489716_2556 | SAMN04489716_2559 | Helicase conserved C-terminal domain-containing protein. | SNF2 family N-terminal domain-containing protein. | 0.928 |
| SDT11669.1 | SDT11595.1 | SAMN04489716_2557 | SAMN04489716_2555 | Hypothetical protein. | UvrD-like helicase C-terminal domain-containing protein. | 0.964 |
| SDT11669.1 | SDT11626.1 | SAMN04489716_2557 | SAMN04489716_2556 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.956 |
| SDT11669.1 | SDT11706.1 | SAMN04489716_2557 | SAMN04489716_2558 | Hypothetical protein. | Hypothetical protein. | 0.989 |
| SDT11669.1 | SDT11738.1 | SAMN04489716_2557 | SAMN04489716_2559 | Hypothetical protein. | SNF2 family N-terminal domain-containing protein. | 0.927 |
| SDT11706.1 | SDT11595.1 | SAMN04489716_2558 | SAMN04489716_2555 | Hypothetical protein. | UvrD-like helicase C-terminal domain-containing protein. | 0.900 |
| SDT11706.1 | SDT11626.1 | SAMN04489716_2558 | SAMN04489716_2556 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.902 |
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