STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT14008.1Transposase. (542 aa)    
Predicted Functional Partners:
SDT13989.1
DNA replication protein DnaC.
  
 0.946
SDS42176.1
DNA replication protein DnaC; Belongs to the DnaA family.
  
 0.807
SDT80656.1
DNA replication protein DnaC.
  
 0.807
SDS71897.1
Transposase InsO and inactivated derivatives.
 
     0.503
SDT14043.1
Flp pilus assembly protein TadB.
       0.432
SDT14075.1
Pilus assembly protein, ATPase of CpaF family.
       0.432
SDT14089.1
Hypothetical protein.
       0.432
SDT14131.1
SAF domain-containing protein.
       0.432
SDT13947.1
Flp pilus assembly protein TadB.
       0.416
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.