STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT15702.1AraC-type DNA-binding protein. (276 aa)    
Predicted Functional Partners:
SDT68664.1
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.781
SDT77998.1
RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.781
sigA
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.781
SDT72862.1
Signal transduction histidine kinase.
    
 0.779
SDT62949.1
Glutamate synthase (NADH) large subunit.
    
  0.756
SDT15630.1
Iron complex transport system substrate-binding protein.
 
 
 0.715
SDT70164.1
Amino acid adenylation domain-containing protein.
     
 0.708
SDT10716.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     
 0.701
SDT70207.1
Amino acid adenylation domain-containing protein.
     
 0.701
SDT80511.1
Amino acid adenylation domain-containing protein.
     
 0.701
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.