STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT45237.1Integral membrane protein. (104 aa)    
Predicted Functional Partners:
SDT45215.1
Rho termination factor, N-terminal domain.
       0.534
SDS83810.1
Hypothetical protein.
  
     0.459
SDT61134.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.425
SDT30714.1
Helix-turn-helix domain-containing protein.
  
     0.418
SDT79501.1
Protein translocase subunit yajC.
   
   0.407
SDT60616.1
Phenazine biosynthesis protein phzE.
    
  0.405
SDT10716.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.404
SDT70207.1
Amino acid adenylation domain-containing protein.
  
 
 0.404
SDT80511.1
Amino acid adenylation domain-containing protein.
  
 
 0.404
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.