STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT55355.1Asparagine synthase (glutamine-hydrolysing). (589 aa)    
Predicted Functional Partners:
SDT62949.1
Glutamate synthase (NADH) large subunit.
  
 
 0.862
SDT75231.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.778
SDT79804.1
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.749
SDT55225.1
Predicted dehydrogenase.
 
     0.748
SDT55305.1
Major Facilitator Superfamily protein.
 
     0.748
SDT55337.1
Hypothetical protein.
  
    0.748
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.746
SDT55240.1
UDP-glucose 4-epimerase.
  
    0.745
SDS76428.1
O-antigen ligase.
 
    0.735
SDT55257.1
Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.722
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.