STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT59440.1Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1041 aa)    
Predicted Functional Partners:
SDT04675.1
Hypothetical protein.
  
 0.968
SDT79501.1
Protein translocase subunit yajC.
    
 
 0.888
SDS23152.1
RND family efflux transporter, MFP subunit.
  
 0.819
SDS26824.1
HlyD family secretion protein.
  
 0.819
SDS26936.1
Membrane fusion protein, macrolide-specific efflux system.
  
 0.819
SDS35717.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
  
 0.819
SDS72476.1
Hypothetical protein.
  
 0.819
SDT24602.1
Hypothetical protein.
  
 0.819
SDT47594.1
Membrane fusion protein, macrolide-specific efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.819
SDT47613.1
HlyD family secretion protein.
  
 0.819
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.