STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT59614.1Pilus assembly protein CpaF. (473 aa)    
Predicted Functional Partners:
SDT59643.1
Tight adherence protein C.
 
  
 0.981
SDT59628.1
Tight adherence protein B.
 
  
 0.978
SDT59599.1
Pilus assembly protein CpaE.
  
 0.975
SDT59551.1
TadE-like protein; Manually curated.
 
    0.950
SDT59582.1
Pilus assembly protein CpaB.
 
  
 0.912
SDT72475.1
Type II secretion system (T2SS), protein F.
 
  
 0.890
SDT13947.1
Flp pilus assembly protein TadB.
 
  
 0.739
SDT59569.1
Hypothetical protein.
       0.697
SDT72480.1
Tight adherence protein B.
  
  
 0.588
SDT59659.1
Putative ABC transport system ATP-binding protein.
       0.550
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.