STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT62643.1DNA-binding transcriptional regulator, GntR family. (238 aa)    
Predicted Functional Partners:
SDS76401.1
DNA-binding transcriptional regulator, GntR family.
  
     0.752
SDT46107.1
DNA-binding transcriptional regulator, GntR family.
  
     0.747
SDT58482.1
DNA-binding transcriptional regulator, GntR family.
  
     0.725
SDT37187.1
Transcriptional regulator, GntR family.
  
  
 0.580
SDT62628.1
Predicted ATPase.
       0.574
SDT62655.1
ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family.
       0.549
SDT62519.1
Allantoin racemase.
 
     0.456
SDT76984.1
DNA-binding transcriptional regulator, FadR family; Manually curated.
  
  
 0.451
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
 
   0.437
SDT62615.1
Hypothetical protein.
       0.419
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.