STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT67694.1Competence protein ComEC. (788 aa)    
Predicted Functional Partners:
SDT67698.1
SLBB domain-containing protein.
 
  
 0.957
SDS57550.1
PAS domain S-box-containing protein.
  
  
 0.943
SDT69873.1
Predicted amidophosphoribosyltransferases.
 
  
 0.915
SDT69640.1
Type IV pilus assembly protein PilC.
 
  
 0.914
SDT77731.1
DNA processing protein.
 
  
 0.903
SDT67687.1
DNA polymerase III, delta subunit.
    
 0.864
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.860
SDT69651.1
Type IV pilus assembly protein PilB.
 
  
 0.811
SDT64474.1
DNA polymerase-3 subunit epsilon.
 
  
 0.800
SDT69627.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.770
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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