SDT70175.1 protein (Actinoplanes derwentensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDT70175.1

Phosphopantetheine attachment site. (80 aa)

Predicted Functional Partners:

SDS27949.1

0.999

SDS41462.1

0.999

SDT10716.1

0.999

SDT17156.1

0.999

SDT17754.1

0.999

SDT17888.1

0.999

SDT17975.1

0.999

SDT18036.1

0.999

SDT18060.1

0.999

SDT56593.1

0.999

Your Current Organism:

Actinoplanes derwentensis

NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDS27949.1	SDS41462.1	SAMN04489716_0428	SAMN04489716_0732	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	0.999
SDS27949.1	SDT10716.1	SAMN04489716_0428	SAMN04489716_2526	Amino acid adenylation domain-containing protein.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.999
SDS27949.1	SDT17156.1	SAMN04489716_0428	SAMN04489716_2730	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS27949.1	SDT17754.1	SAMN04489716_0428	SAMN04489716_2748	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS27949.1	SDT17888.1	SAMN04489716_0428	SAMN04489716_2754	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS27949.1	SDT17975.1	SAMN04489716_0428	SAMN04489716_2756	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS27949.1	SDT18036.1	SAMN04489716_0428	SAMN04489716_2758	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS27949.1	SDT18060.1	SAMN04489716_0428	SAMN04489716_2759	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS27949.1	SDT56593.1	SAMN04489716_0428	SAMN04489716_4551	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDS27949.1	SDT70175.1	SAMN04489716_0428	SAMN04489716_5900	Amino acid adenylation domain-containing protein.	Phosphopantetheine attachment site.	0.999
SDS41462.1	SDS27949.1	SAMN04489716_0732	SAMN04489716_0428	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDS41462.1	SDT10716.1	SAMN04489716_0732	SAMN04489716_2526	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.999
SDS41462.1	SDT17156.1	SAMN04489716_0732	SAMN04489716_2730	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl transferase domain-containing protein.	0.988
SDS41462.1	SDT17754.1	SAMN04489716_0732	SAMN04489716_2748	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS41462.1	SDT17888.1	SAMN04489716_0732	SAMN04489716_2754	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS41462.1	SDT17975.1	SAMN04489716_0732	SAMN04489716_2756	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS41462.1	SDT18036.1	SAMN04489716_0732	SAMN04489716_2758	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS41462.1	SDT18060.1	SAMN04489716_0732	SAMN04489716_2759	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDS41462.1	SDT56593.1	SAMN04489716_0732	SAMN04489716_4551	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDS41462.1	SDT70175.1	SAMN04489716_0732	SAMN04489716_5900	Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.	Phosphopantetheine attachment site.	0.999

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About