STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT72047.1Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling). (340 aa)    
Predicted Functional Partners:
SDT76069.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.708
SDT72052.1
Putative zinc-finger.
       0.675
SDT72055.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.675
SDT72042.1
PA domain-containing protein; Belongs to the peptidase S8 family.
       0.467
SDT72058.1
Protein of unknown function.
       0.427
SDT76066.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
    
  0.413
SDT67563.1
CubicO group peptidase, beta-lactamase class C family.
 
     0.409
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.