STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT75483.1Methyltransferase domain-containing protein. (247 aa)    
Predicted Functional Partners:
SDT75486.1
Protein of unknown function.
 
     0.853
SDT70164.1
Amino acid adenylation domain-containing protein.
    
 0.822
SDT10716.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.783
SDT70207.1
Amino acid adenylation domain-containing protein.
    
 0.783
SDT80511.1
Amino acid adenylation domain-containing protein.
    
 0.783
SDT80731.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
    
 0.747
SDT56593.1
Amino acid adenylation domain-containing protein.
    
 0.728
SDT75480.1
Cupin domain-containing protein.
 
     0.673
SDT46285.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
     
 0.672
SDT78519.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
     
 0.672
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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