STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT78207.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
SDT78204.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.994
SDT66396.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.966
SDT66552.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.966
SDT72055.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.966
SDS84341.1
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.965
SDT54648.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.960
SDT51819.1
Protein of unknown function.
 
     0.750
SDT78213.1
Protein of unknown function.
 
     0.713
SDT78210.1
Predicted lipoprotein with conserved Yx(FWY)xxD motif.
 
     0.674
SDT72647.1
Geranylgeranyl reductase family.
   
  
 0.612
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.