STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT81132.1Geranyl diphosphate 2-C-methyltransferase. (281 aa)    
Predicted Functional Partners:
SDT81131.1
2-methylisoborneol synthase.
 
   
 0.964
SDT81128.1
Cyclic nucleotide-binding domain-containing protein.
 
   
 0.876
SDT46285.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
    
  0.755
SDT78519.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
    
  0.755
SDT70164.1
Amino acid adenylation domain-containing protein.
    
 0.747
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.743
SDT79969.1
TIGR02646 family protein.
  
     0.737
SDS61050.1
TIGR02646 family protein.
  
     0.733
SDT79967.1
AAA domain-containing protein.
  
     0.672
SDT10716.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.671
Your Current Organism:
Actinoplanes derwentensis
NCBI taxonomy Id: 113562
Other names: A. derwentensis, ATCC 49798, DSM 43941, IFO 14935, JCM 7556, NBRC 14935, NCIB 12875, NCIB:12875, NCIMB 12875, NRRL B-16692, strain LA 107
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