STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEJ83219.1Serine-glyoxylate aminotransferase; Function of strongly homologous gene; enzyme. (402 aa)    
Predicted Functional Partners:
mcl
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
    
 0.942
CEJ84719.1
Putative Threonine ammonia-lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.906
lpd-2
Lipoamide dehydrogenase, E3 component is part of three enzyme complexes; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.905
CEJ83697.1
Putative D-isomer specific 2-hydroxyacid dehydrogenases family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.904
CEJ87099.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.904
gcvP
Glycine cleavage system P-protein (glycine dehydrogenase); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.897
ald
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
     
 0.896
CEJ87094.1
Serine-glyoxylate aminotransferase; Function of strongly homologous gene; enzyme.
  
  
 
0.896
hemA
5-aminolevulinate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.895
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
    
 0.894
Your Current Organism:
Hyphomicrobium sp. GJ21
NCBI taxonomy Id: 113574
Other names: H. sp. GJ21
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