CEJ85687.1 protein (Hyphomicrobium sp. GJ21)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CEJ85687.1

Phage portal protein, HK97 family. (677 aa)

Predicted Functional Partners:

CEJ85680.1

0.970

CEJ85674.1

0.955

CEJ85668.1

0.952

CEJ85669.1

0.952

CEJ85665.1

0.951

CEJ85675.1

0.943

CEJ87321.1

0.937

CEJ85678.1

0.925

CEJ85681.1

0.912

CEJ84426.1

0.887

Your Current Organism:

Hyphomicrobium sp. GJ21

NCBI taxonomy Id: 113574
Other names: H. sp. GJ21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEJ84426.1	CEJ85665.1	HYPGJ_20308	HYPGJ_21151	Phage major capsid protein (fragment).	Gene transfer agent (GTA) like protein.	0.857
CEJ84426.1	CEJ85668.1	HYPGJ_20308	HYPGJ_21153	Phage major capsid protein (fragment).	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.864
CEJ84426.1	CEJ85669.1	HYPGJ_20308	HYPGJ_21154	Phage major capsid protein (fragment).	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.866
CEJ84426.1	CEJ85674.1	HYPGJ_20308	HYPGJ_21158	Phage major capsid protein (fragment).	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.869
CEJ84426.1	CEJ85675.1	HYPGJ_20308	HYPGJ_21159	Phage major capsid protein (fragment).	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.760
CEJ84426.1	CEJ85678.1	HYPGJ_20308	HYPGJ_21161	Phage major capsid protein (fragment).	Phage head-tail adaptor.	0.763
CEJ84426.1	CEJ85680.1	HYPGJ_20308	HYPGJ_21162	Phage major capsid protein (fragment).	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.876
CEJ84426.1	CEJ85687.1	HYPGJ_20308	HYPGJ_21167	Phage major capsid protein (fragment).	Phage portal protein, HK97 family.	0.887
CEJ84426.1	CEJ87321.1	HYPGJ_20308	HYPGJ_31064	Phage major capsid protein (fragment).	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.797
CEJ85665.1	CEJ84426.1	HYPGJ_21151	HYPGJ_20308	Gene transfer agent (GTA) like protein.	Phage major capsid protein (fragment).	0.857
CEJ85665.1	CEJ85668.1	HYPGJ_21151	HYPGJ_21153	Gene transfer agent (GTA) like protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.992
CEJ85665.1	CEJ85669.1	HYPGJ_21151	HYPGJ_21154	Gene transfer agent (GTA) like protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.992
CEJ85665.1	CEJ85674.1	HYPGJ_21151	HYPGJ_21158	Gene transfer agent (GTA) like protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.969
CEJ85665.1	CEJ85675.1	HYPGJ_21151	HYPGJ_21159	Gene transfer agent (GTA) like protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.951
CEJ85665.1	CEJ85678.1	HYPGJ_21151	HYPGJ_21161	Gene transfer agent (GTA) like protein.	Phage head-tail adaptor.	0.921
CEJ85665.1	CEJ85680.1	HYPGJ_21151	HYPGJ_21162	Gene transfer agent (GTA) like protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.958
CEJ85665.1	CEJ85681.1	HYPGJ_21151	HYPGJ_21163	Gene transfer agent (GTA) like protein.	Phage major capsid protein, HK97 family.	0.885
CEJ85665.1	CEJ85687.1	HYPGJ_21151	HYPGJ_21167	Gene transfer agent (GTA) like protein.	Phage portal protein, HK97 family.	0.951
CEJ85665.1	CEJ87321.1	HYPGJ_21151	HYPGJ_31064	Gene transfer agent (GTA) like protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.859
CEJ85668.1	CEJ84426.1	HYPGJ_21153	HYPGJ_20308	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Phage major capsid protein (fragment).	0.864