STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAH_02027RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. (285 aa)    
Predicted Functional Partners:
GAH_00868
Putative nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module.
   
 0.999
rps11
Archaeal ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 0.996
rps4
Ribosomal protein S4{archaeal type}/S9{eukaryote cytosolic type}; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 0.995
rps6e
Ribosomal protein S6E {S10}; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
  0.995
rps5
Ribosomal protein S5{archaeal type}/S2{eukaryote cytosolic type}; With S4 and S12 plays an important role in translational accuracy.
 
 
 0.995
rps3
Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.987
GAH_00879
Serine/threonine protein kinase involved in cell cycle control.
  
 
0.976
GAH_00878
KH domain protein.
   
 
 0.969
rps19p
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.968
rps15
SSU ribosomal protein S15P.
  
 
 0.965
Your Current Organism:
Geoglobus ahangari
NCBI taxonomy Id: 113653
Other names: ATCC BAA-425, G. ahangari, Geoglobus ahangari Kashefi et al. 2002, hyperthermophile str. 234, strain 234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.