STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKH56742.1Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
ccsB
Cytochrome C biogenesis protein CcsB; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
 
  
 0.935
ccsA
C-type cytochrome biogenesis protein CcsB; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
  
  
 0.746
ccsA-2
C-type cytochrome biogenesis protein CcsB; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
  
  
 0.746
OKH57288.1
ZIP family metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.688
OKH42450.1
ZIP family zinc transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.688
OKH54018.1
Recombinase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.670
OKH56741.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.627
OKH56615.1
Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.607
thf1
Photosystem II biogenesis protein Psp29; May be involved in photosynthetic membrane biogenesis.
  
     0.592
OKH60871.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
Your Current Organism:
Scytonema sp. HK05
NCBI taxonomy Id: 1137095
Other names: S. sp. HK-05, Scytonema sp. HK-05, Scytonema sp. IAM M-291, Scytonema sp. NIES-2130
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.