STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A067NLY7RBR-type E3 ubiquitin transferase. (425 aa)    
Predicted Functional Partners:
A0A067NR75
Ubiquitin-like domain-containing protein.
    
 0.898
A0A067NP39
Sas10 domain-containing protein.
   
 0.874
A0A067P5B6
Uncharacterized protein.
   
 0.870
A0A067PDW6
U3 small nucleolar RNA-associated protein 22.
   
  0.862
A0A067NYT6
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.855
A0A067NNX5
Uncharacterized protein.
   
  0.853
A0A067NPC2
S4 RNA-binding domain-containing protein.
   
  0.852
A0A067N5J9
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 0.849
A0A067NT70
Uncharacterized protein.
   
 0.849
A0A067NUD1
Slu7 domain-containing protein.
    
 0.847
Your Current Organism:
Pleurotus ostreatus
NCBI taxonomy Id: 1137138
Other names: P. ostreatus PC15, Pleurotus ostreatus PC15
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