STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsUSSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family. (64 aa)    
Predicted Functional Partners:
rpsT
SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.
 
 
 0.967
D778_00454
SSU ribosomal protein S18p.
  
 
 0.961
D778_00716
SSU ribosomal protein S7p (S5e).
   
 
 0.945
D778_02527
LSU ribosomal protein L33p.
  
 
 0.944
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.940
D778_02187
Cell division trigger factor.
 
 
 0.940
D778_02809
SSU ribosomal protein S16p.
  
 
 0.935
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.934
D778_01582
LSU ribosomal protein L21p.
   
 
 0.932
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.932
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.