STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_002814-hydroxyproline epimerase; Belongs to the proline racemase family. (336 aa)    
Predicted Functional Partners:
D778_00282
Ketoglutarate semialdehyde dehydrogenase.
 
 
  0.926
D778_00283
1-pyrroline-4-hydroxy-2-carboxylate deaminase.
 
     0.885
D778_00279
D-amino acid dehydrogenase family protein in hydroxy-L-proline catabolic cluster.
 
  
 0.737
D778_00276
Ornithine cyclodeaminase.
 
  
 0.555
D778_00015
TspO and MBR like protein.
   
    0.540
D778_00284
Transcriptional regulator.
 
     0.540
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.