STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_00368TRNA and rRNA cytosine-C5-methylase. (412 aa)    
Predicted Functional Partners:
D778_01246
Methionyl-tRNA formyltransferase.
 
  
 0.866
D778_00183
LSU ribosomal protein L10p (P0).
  
 
 0.847
rpmD
LSU ribosomal protein L30p (L7e).
   
 
 0.807
D778_00702
LSU ribosomal protein L24p (L26e).
   
   0.801
D778_02122
LSU ribosomal protein L13p (L13Ae).
  
   0.785
D778_00708
LSU ribosomal protein L22p (L17e).
   
   0.783
D778_00711
LSU ribosomal protein L23p (L23Ae).
   
   0.783
D778_00713
LSU ribosomal protein L3p (L3e).
   
   0.782
D778_00367
Endonuclease I.
       0.781
D778_00703
LSU ribosomal protein L14p (L23e).
   
   0.780
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.