STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_00600Dihydrodipicolinate reductase. (233 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.993
D778_00558
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
 
 
 0.979
D778_00283
1-pyrroline-4-hydroxy-2-carboxylate deaminase.
 
 
 0.971
D778_02274
Biosynthetic Aromatic amino acid aminotransferase alpha.
 
  
 0.920
D778_00602
Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family.
     
 0.834
D778_00603
Septum site-determining protein MinD.
  
    0.820
D778_00601
Hypothetical protein.
       0.816
lysA
Diaminopimelate decarboxylase.
 
 
 0.799
D778_01732
Aspartate-semialdehyde dehydrogenase.
 
  
 0.793
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
   
 0.725
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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