STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_00713LSU ribosomal protein L3p (L3e). (205 aa)    
Predicted Functional Partners:
D778_00066
Translation elongation factor P.
   
 
 0.999
rplL
LSU ribosomal protein L7/L12 (P1/P2); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.999
D778_00183
LSU ribosomal protein L10p (P0).
  
 0.999
D778_00184
LSU ribosomal protein L1p (L10Ae).
  
 0.999
D778_00185
LSU ribosomal protein L11p (L12e).
  
 0.999
rpsT
SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.
   
 
 0.999
D778_00378
LSU ribosomal protein L31p.
  
 
 0.999
D778_00453
SSU ribosomal protein S6p.
   
 0.999
D778_00454
SSU ribosomal protein S18p.
   
 
 0.999
D778_00455
LSU ribosomal protein L9p.
   
 
 0.999
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.