STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_00726ATPase, AAA family. (425 aa)    
Predicted Functional Partners:
D778_02629
ATP-dependent DNA helicase RecQ.
  
 
 
 0.620
D778_01467
Transcriptional regulator, AsnC family.
      0.609
D778_00725
Hypothetical protein.
  
    0.590
D778_01245
ATP-dependent DNA helicase, RecQ family.
   
 
 0.575
D778_01478
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
 
    0.574
D778_02124
DNA polymerase I.
 
  
 0.572
D778_01189
DNA polymerase III beta subunit.
    
 
 0.501
D778_02525
Molybdopterin binding motif protein.
     
 0.475
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
 
    0.427
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.