STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_00899Chromosomal replication initiator protein DnaA; Belongs to the DnaA family. (475 aa)    
Predicted Functional Partners:
D778_01189
DNA polymerase III beta subunit.
 
 0.987
D778_00898
Low molecular weight protein tyrosine phosphatase.
      0.906
recF
DNA recombination and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
 0.875
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
 
 
 
 0.867
D778_00896
Tetrapyrrole (Corrin-Porphyrin) methylase family protein.
 
    0.861
D778_00001
RNA-directed DNA polymerase.
 
     0.781
D778_01908
RecA protein.
 
   
 0.670
D778_01072
DNA gyrase subunit B.
 
  
 0.642
D778_00133
DNA gyrase subunit A.
     
 0.631
D778_01478
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.595
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.