STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaKPhenylacetate-CoA oxygenase/reductase, PaaK subunit. (357 aa)    
Predicted Functional Partners:
D778_01014
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
 
 
 0.983
D778_01007
Phenylacetate-CoA oxygenase, PaaI subunit.
 0.980
D778_01005
Phenylacetate-CoA oxygenase, PaaG subunit.
 
 0.979
paaJ
Phenylacetate-CoA oxygenase, PaaJ subunit.
 
 0.973
D778_01006
Phenylacetate-CoA oxygenase, PaaH subunit.
 
 
 0.972
D778_01083
Ferredoxin.
  
 
 0.849
D778_01335
Cysteine desulfurase.
  
 0.847
D778_01011
Phenylacetic acid degradation protein PaaD, thioesterase.
 
 
  0.818
D778_01556
Hypothetical protein.
  
 
 0.789
D778_01605
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.785
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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