STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01007Phenylacetate-CoA oxygenase, PaaI subunit. (250 aa)    
Predicted Functional Partners:
D778_01006
Phenylacetate-CoA oxygenase, PaaH subunit.
 
 0.998
D778_01005
Phenylacetate-CoA oxygenase, PaaG subunit.
  
  0.995
paaJ
Phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.992
D778_01011
Phenylacetic acid degradation protein PaaD, thioesterase.
 
 
 0.983
paaK
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 0.980
D778_01876
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 0.966
D778_01009
Enoyl-CoA hydratase.
 
 
 0.958
D778_01014
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
 
  
 0.899
D778_01963
Phenylacetate-coenzyme A ligase.
 
 
 0.753
D778_01869
Capsular polysaccharide biosynthesis protein.
  
 
 0.705
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.