STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01094TonB-dependent receptor. (752 aa)    
Predicted Functional Partners:
D778_01093
Hypothetical protein.
       0.605
D778_00848
Hypothetical protein.
  
 
   0.511
D778_02800
Hypothetical protein.
  
 
   0.478
D778_00521
Hypothetical protein.
  
 
   0.446
D778_01371
Hypothetical protein.
  
 
   0.433
D778_00286
Hypothetical protein.
   
   0.432
D778_01431
TonB.
   
   0.432
D778_01523
Hypothetical protein.
  
 
   0.432
D778_02153
TonB.
   
   0.432
D778_02249
TonB.
   
   0.432
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.