STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01160Putative oxidoreductase/dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (263 aa)    
Predicted Functional Partners:
D778_01159
Hypothetical protein.
 
    0.881
D778_01156
O-succinylbenzoic acid--CoA ligase.
    
 0.672
D778_01014
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
    
 0.635
fabZ
N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
     
 0.623
D778_01158
O-succinylbenzoate synthase.
    
  0.564
D778_01157
Hypothetical protein.
       0.557
D778_01993
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.524
D778_00778
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.500
D778_00320
Short chain dehydrogenase.
  
 
  0.439
D778_00738
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 
0.427
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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