STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01192Response regulator, LytR/AlgR family. (250 aa)    
Predicted Functional Partners:
D778_01193
Hypothetical protein.
 
  0.972
D778_01458
Putative two-component system sensor.
 
  0.850
D778_01379
Putative two-component system sensor protein.
 
  0.848
D778_00461
Signal transduction histidine kinase, LytS.
 
  0.839
D778_01191
Hypothetical protein.
 
     0.822
D778_01429
Putative two-component system sensor protein histidine kinase.
  
  0.814
D778_02065
Sensor histidine kinase.
 
  0.801
D778_01427
Two-component system response regulator.
  
  
 
0.707
D778_01493
Two-component system sensor histidine kinase/response.
    
 0.671
D778_00518
Sensory transduction regulatory protein.
  
  
  0.650
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.