STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01231Cryptochrome. (436 aa)    
Predicted Functional Partners:
D778_01232
Deoxyribodipyrimidine photolyase.
   
 0.943
D778_01234
Hypothetical protein.
 
     0.738
D778_01233
Hypothetical protein.
 
     0.690
D778_01228
ABC1 family protein.
 
     0.628
D778_01239
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
    
0.574
D778_01229
Flavoprotein oxygenase, DIM6/NTAB family.
 
     0.571
D778_01755
Manganese superoxide dismutase.
  
   0.567
D778_01227
Hypothetical protein.
 
     0.550
D778_01237
Dehydrogenase.
 
   
 0.530
D778_01826
Metal-dependent hydrolase.
    
   0.530
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.