STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01247DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. (90 aa)    
Predicted Functional Partners:
rpsT
SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.
  
  
 0.668
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
  
 0.629
D778_01248
Transcriptional regulator, ArsR family; Belongs to the UPF0301 (AlgH) family.
     
 0.569
D778_02124
DNA polymerase I.
 
 
 
 0.547
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
    0.528
D778_01245
ATP-dependent DNA helicase, RecQ family.
       0.513
D778_01246
Methionyl-tRNA formyltransferase.
       0.511
D778_00899
Chromosomal replication initiator protein DnaA; Belongs to the DnaA family.
  
 
 
 0.510
D778_01244
Hypothetical protein.
       0.508
D778_02134
Transcription termination protein NusA.
  
 
   0.492
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.