STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_01432TonB-dependent receptor. (717 aa)    
Predicted Functional Partners:
D778_01430
Hypothetical protein.
 
     0.863
D778_01431
TonB.
   
 
 0.773
D778_00603
Septum site-determining protein MinD.
    
   0.551
D778_00720
Hypothetical protein.
    
   0.551
D778_02547
WD40-like beta Propeller.
  
 
   0.539
D778_00286
Hypothetical protein.
   
 
 0.532
D778_02153
TonB.
   
 
 0.532
D778_02249
TonB.
   
 
 0.532
D778_01433
Hypothetical protein.
       0.513
D778_00429
Hypothetical protein.
    
 
 0.490
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.