STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_02114ABC transporter ATP-binding protein. (252 aa)    
Predicted Functional Partners:
D778_00374
Lipid A export ATP-binding/permease protein MsbA.
  
  0.982
D778_00417
ABC transporter, transmembrane region:ABC transporter.
  
  0.981
D778_00026
Hypothetical protein.
  
 0.883
D778_00881
HlyD family secretion protein.
  
 0.883
D778_01293
Lipid A export ATP-binding/permease protein MsbA.
  
  0.871
D778_00339
ABC transporter, ATP-binding protein.
  
  0.869
D778_00895
LysM domain protein.
  
  
 0.731
D778_02113
Hypothetical protein.
 
     0.723
D778_01559
Cobalt-zinc-cadmium resistance protein CzcA.
  
 
 0.413
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.