STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_02286Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. (325 aa)    
Predicted Functional Partners:
D778_02195
Phytoene synthase.
  
 0.955
D778_02180
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.951
D778_02088
Dimethylallyltransferase.
  
  
 
0.926
D778_01162
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
    
 0.913
D778_01218
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase.
 
 
 0.762
D778_02756
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase.
  
 
 0.729
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
  
 
 0.661
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
 
 0.661
D778_02288
Hypothetical protein.
       0.560
D778_02285
CHU large protein.
       0.522
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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