STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB56316.1Carbon dioxide concentrating mechanism protein CcmK. (102 aa)    
Predicted Functional Partners:
ccmL
Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB.
 
 
 
 0.963
ABB56552.1
Hypothetical protein.
 
 
 
 0.877
ABB56317.1
Carbon dioxide concentrating mechanism protein CcmK.
 
   
0.692
ABB57454.1
Carbon dioxide concentrating mechanism protein.
    
 
 0.689
ABB57565.1
Possible Rubisco chaperonin.
      
 0.628
ABB57457.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
   
 
 0.627
ccmM
Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator.
   
 
 0.611
SEN0013
Conserved hypothetical protein.
      
 0.579
ABB56315.1
Dihydrouridine synthase TIM-barrel protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.552
SEN0014
Conserved hypothetical protein.
      
 0.530
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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