STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB56892.1Conserved hypothetical protein. (125 aa)    
Predicted Functional Partners:
ABB57164.1
Hypothetical protein.
      
 0.855
ABB58482.1
Tfp pilus assembly protein PilN-like.
  
   
 0.848
ABB57956.1
Conserved hypothetical protein.
  
   
 0.806
ABB56897.1
Hypothetical protein.
 
     0.800
ABB58481.1
Putative type IV pilus assembly protein PilO.
  
   
 0.794
ABB56921.1
Conserved hypothetical protein.
  
     0.775
ABB57454.1
Carbon dioxide concentrating mechanism protein.
  
     0.775
ABB57990.1
Conserved hypothetical protein.
  
     0.775
ABB57565.1
Possible Rubisco chaperonin.
  
     0.774
ABB57866.1
Conserved hypothetical protein.
  
     0.774
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.