STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB57080.1Phycobilisome rod linker polypeptide; Belongs to the phycobilisome linker protein family. (289 aa)    
Predicted Functional Partners:
cpcB1
Phycocyanin, beta subunit; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
 
 0.999
cpcA1
Phycocyanin, alpha subunit; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
 
 0.999
ABB57081.1
Phycocyanin linker protein 9K.
 
 
 0.999
ABB56359.1
Allophycocyanin alpha chain.
  
 
 
 0.995
ABB57082.1
Phycocyanin, beta subunit.
 
 
 
 0.990
ABB57083.1
Phycocyanin, alpha subunit.
 
 
 
 0.990
ABB58060.1
Phycobilisome rod-core linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
0.989
cpcE
PBS lyase HEAT-like repeat; Required for the chromophorylation of the cpcA gene product. Belongs to the CpcE/RpcE/PecE family.
 
  
 0.985
ABB56358.1
Allophycocyanin, beta subunit.
  
 
 
 0.977
cpcF
Phycocyanin alpha-subunit phycocyanobilin lyase; Required for the chromophorylation of the cpcA gene product. Belongs to the CpcE/RpcE/PecE family.
 
  
 0.977
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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